IL_4WWW_388

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGAGG*CUGGA

Length

11 nucleotides

Bulged bases

4WWW|1|XA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_388 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3714

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4WWW|1|XA|U|662
4WWW|1|XA|A|663
4WWW|1|XA|G|664
4WWW|1|XA|A|665
4WWW|1|XA|G|666
4WWW|1|XA|G|667
*
4WWW|1|XA|C|739
4WWW|1|XA|U|740
4WWW|1|XA|G|741
4WWW|1|XA|G|742
4WWW|1|XA|A|743

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XO

30S ribosomal protein S15

Chain XR

30S ribosomal protein S18