IL_4WWW_391

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAAC*GGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_391 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2379

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WWW|1|XA|G|778
4WWW|1|XA|C|779
4WWW|1|XA|A|780
4WWW|1|XA|A|781
4WWW|1|XA|A|782
4WWW|1|XA|C|783
*
4WWW|1|XA|G|799
4WWW|1|XA|G|800
4WWW|1|XA|U|801
4WWW|1|XA|A|802
4WWW|1|XA|G|803
4WWW|1|XA|U|804

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain XU

30S ribosomal protein S21

Chain YA

Large subunit ribosomal RNA; LSU rRNA