IL_4WWW_397

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_397 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2584

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

4WWW|1|YA|G|869
4WWW|1|YA|U|870
4WWW|1|YA|U|871
4WWW|1|YA|U|872
*
4WWW|1|YA|A|905
4WWW|1|YA|U|906
4WWW|1|YA|G|907
4WWW|1|YA|C|908

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YM

50S ribosomal protein L16