3D structure

PDB id
4WWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to CEM-101
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CC*GAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WWW_413 not in the Motif Atlas
Homologous match to IL_5J7L_357
Geometric discrepancy: 0.2678
The information below is about IL_5J7L_357
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
18

Unit IDs

4WWW|1|YB|C|30
4WWW|1|YB|C|31
*
4WWW|1|YB|G|51
4WWW|1|YB|A|52
4WWW|1|YB|A|53
4WWW|1|YB|G|54

Current chains

Chain YB
5S rRNA

Nearby chains

Chain YF
50S ribosomal protein L5
Chain YO
50S ribosomal protein L18

Coloring options:


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