IL_4WZD_338

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZD_338 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2293

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4WZD|1|1H|C|2140||||P_1
4WZD|1|1H|G|2141||||P_1
4WZD|1|1H|C|2142||||P_1
*
4WZD|1|1H|G|2149||||P_1
4WZD|1|1H|U|2150||||P_1
4WZD|1|1H|G|2151||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11

Chain 71

50S ribosomal protein L1