IL_4WZJ_012
3D structure
- PDB id
- 4WZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spliceosomal U4 snRNP core domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUG*CUAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WZJ_012 not in the Motif Atlas
- Geometric match to IL_5BTM_002
- Geometric discrepancy: 0.1395
- The information below is about IL_5BTM_002
- Detailed Annotation
- Receptor of 11-nt loop-receptor motif
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_53448.1
- Basepair signature
- cWW-tWH-cSH-cWW
- Number of instances in this motif group
- 11
Unit IDs
4WZJ|1|VVVV|U|46
4WZJ|1|VVVV|A|47
4WZJ|1|VVVV|U|48
4WZJ|1|VVVV|G|49
*
4WZJ|1|VVVV|C|56
4WZJ|1|VVVV|U|57
4WZJ|1|VVVV|A|58
4WZJ|1|VVVV|A|59
4WZJ|1|VVVV|G|60
Current chains
- Chain VVVV
- U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.
Nearby chains
- Chain BBBB
- Small nuclear ribonucleoprotein-associated proteins B and B'
- Chain CCCC
- Small nuclear ribonucleoprotein Sm D1
- Chain DDDD
- Small nuclear ribonucleoprotein Sm D2
Coloring options: