IL_4WZO_039

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_039 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.2211

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4WZO|1|13|G|927
4WZO|1|13|G|928
4WZO|1|13|G|929
*
4WZO|1|13|C|1388
4WZO|1|13|C|1389
4WZO|1|13|U|1390

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 4E

30S ribosomal protein S5

Chain 4K

mRNA