IL_4WZO_110

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_110 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1693

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WZO|1|14|C|1040
4WZO|1|14|C|1041
4WZO|1|14|G|1042
4WZO|1|14|C|1043
*
4WZO|1|14|G|1112
4WZO|1|14|U|1113
4WZO|1|14|G|1114
4WZO|1|14|G|1115

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6

Chain D5

50S ribosomal protein L25