IL_4WZO_157

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_157 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3993

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4WZO|1|14|G|2110
4WZO|1|14|C|2111
4WZO|1|14|G|2112
4WZO|1|14|U|2113
4WZO|1|14|A|2114
4WZO|1|14|G|2115
4WZO|1|14|G|2116
4WZO|1|14|A|2117
4WZO|1|14|U|2118
4WZO|1|14|A|2119
4WZO|1|14|G|2120
4WZO|1|14|G|2121
4WZO|1|14|U|2122
*
4WZO|1|14|A|2176
4WZO|1|14|C|2177
4WZO|1|14|C|2178
4WZO|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA