IL_4XEJ_017

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1483

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4XEJ|1|A16S|G|409
4XEJ|1|A16S|G|410
4XEJ|1|A16S|A|411
4XEJ|1|A16S|A|412
4XEJ|1|A16S|G|413
4XEJ|1|A16S|A|414
4XEJ|1|A16S|A|415
4XEJ|1|A16S|G|416
*
4XEJ|1|A16S|U|427
4XEJ|1|A16S|G|428
4XEJ|1|A16S|U|429
4XEJ|1|A16S|A|430
4XEJ|1|A16S|A|431
4XEJ|1|A16S|A|432
4XEJ|1|A16S|C|433

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS04

30S ribosomal protein S4