IL_4XEJ_018

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1071

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4XEJ|1|A16S|G|446
4XEJ|1|A16S|G|447
4XEJ|1|A16S|A|448
4XEJ|1|A16S|C|449
4XEJ|1|A16S|G|450
*
4XEJ|1|A16S|C|483
4XEJ|1|A16S|G|484
4XEJ|1|A16S|G|485
4XEJ|1|A16S|U|486
4XEJ|1|A16S|A|487
4XEJ|1|A16S|C|488

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS04

30S ribosomal protein S4

Chain AS16

30S ribosomal protein S16

Chain BL09

50S ribosomal protein L9