IL_4XEJ_021

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUGCCAGC*GCGGUAAUAC

Length

18 nucleotides

Bulged bases

4XEJ|1|A16S|A|532, 4XEJ|1|A16S|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A16S|G|515
4XEJ|1|A16S|U|516
4XEJ|1|A16S|G|517
4XEJ|1|A16S|C|518
4XEJ|1|A16S|C|519
4XEJ|1|A16S|A|520
4XEJ|1|A16S|G|521
4XEJ|1|A16S|C|522
*
4XEJ|1|A16S|G|527
4XEJ|1|A16S|C|528
4XEJ|1|A16S|G|529
4XEJ|1|A16S|G|530
4XEJ|1|A16S|U|531
4XEJ|1|A16S|A|532
4XEJ|1|A16S|A|533
4XEJ|1|A16S|U|534
4XEJ|1|A16S|A|535
4XEJ|1|A16S|C|536

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS03

30S ribosomal protein S3

Chain AS04

30S ribosomal protein S4

Chain AS12

30S ribosomal protein S12