IL_4XEJ_035

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

4XEJ|1|A16S|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_035 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2985

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4XEJ|1|A16S|G|922
4XEJ|1|A16S|A|923
4XEJ|1|A16S|C|924
*
4XEJ|1|A16S|G|1392
4XEJ|1|A16S|U|1393
4XEJ|1|A16S|A|1394
4XEJ|1|A16S|C|1395

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS05

30S ribosomal protein S5