IL_4XEJ_080

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_080 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.1314

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4XEJ|1|A23S|U|293
4XEJ|1|A23S|A|294
4XEJ|1|A23S|G|295
*
4XEJ|1|A23S|C|343
4XEJ|1|A23S|G|344
4XEJ|1|A23S|A|345
4XEJ|1|A23S|A|346
4XEJ|1|A23S|A|347

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL24

50S ribosomal protein L24