IL_4XEJ_083

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_083 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.2235

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4XEJ|1|A23S|C|589
4XEJ|1|A23S|A|590
4XEJ|1|A23S|C|591
*
4XEJ|1|A23S|G|666
4XEJ|1|A23S|U|667
4XEJ|1|A23S|G|668

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL15

50S ribosomal protein L15

Chain AL35

50S ribosomal protein L35