IL_4XEJ_114

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUG*CAUCC

Length

10 nucleotides

Bulged bases

4XEJ|1|A23S|U|1061, 4XEJ|1|A23S|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A23S|G|1058
4XEJ|1|A23S|G|1059
4XEJ|1|A23S|U|1060
4XEJ|1|A23S|U|1061
4XEJ|1|A23S|G|1062
*
4XEJ|1|A23S|C|1076
4XEJ|1|A23S|A|1077
4XEJ|1|A23S|U|1078
4XEJ|1|A23S|C|1079
4XEJ|1|A23S|C|1080

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL11

50S ribosomal protein L11

Chain AL16

50S ribosomal protein L16

Chain AL25

50S ribosomal protein L25