IL_4XEJ_123

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_123 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2127

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4XEJ|1|A23S|U|1357
4XEJ|1|A23S|G|1358
4XEJ|1|A23S|A|1359
4XEJ|1|A23S|A|1360
4XEJ|1|A23S|G|1361
*
4XEJ|1|A23S|C|1370
4XEJ|1|A23S|G|1371
4XEJ|1|A23S|U|1372
4XEJ|1|A23S|A|1373
4XEJ|1|A23S|G|1374

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL28

50S ribosomal protein L28

Chain AL34

50S ribosomal protein L34