IL_4XEJ_146

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_146 not in the Motif Atlas

Geometric match to IL_5AY2_001

Geometric discrepancy: 0.1724

The information below is about IL_5AY2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4XEJ|1|A23S|C|2064
4XEJ|1|A23S|C|2065
4XEJ|1|A23S|C|2066
*
4XEJ|1|A23S|G|2444
4XEJ|1|A23S|G|2445
4XEJ|1|A23S|G|2446

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL04

50S ribosomal protein L4