IL_4XEJ_147

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4XEJ|1|A23S|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_147 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.0974

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4XEJ|1|A23S|G|2067
4XEJ|1|A23S|U|2068
4XEJ|1|A23S|G|2069
*
4XEJ|1|A23S|C|2442
4XEJ|1|A23S|C|2443

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL15

50S ribosomal protein L15