IL_4XEJ_185

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_185 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.2519

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4XEJ|1|A5S|G|9
4XEJ|1|A5S|C|10
4XEJ|1|A5S|C|11
*
4XEJ|1|A5S|G|109
4XEJ|1|A5S|G|110
4XEJ|1|A5S|U|111

Current chains

Chain A5S

5S ribosomal RNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AL18

50S ribosomal protein L18

Chain AL27

50S ribosomal protein L27