IL_4XEJ_195

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4XEJ|1|B16S|C|48, 4XEJ|1|B16S|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_195 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.1143

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4XEJ|1|B16S|C|47
4XEJ|1|B16S|C|48
4XEJ|1|B16S|U|49
4XEJ|1|B16S|A|50
4XEJ|1|B16S|A|51
4XEJ|1|B16S|G|52
*
4XEJ|1|B16S|U|359
4XEJ|1|B16S|A|360
4XEJ|1|B16S|G|361

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS12

30S ribosomal protein S12