IL_4XEJ_215

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_215 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.2152

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4XEJ|1|B16S|C|504
4XEJ|1|B16S|G|505
4XEJ|1|B16S|G|506
4XEJ|1|B16S|C|507
4XEJ|1|B16S|C|508
4XEJ|1|B16S|A|509
4XEJ|1|B16S|A|510
4XEJ|1|B16S|C|511
*
4XEJ|1|B16S|G|540
4XEJ|1|B16S|G|541

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS04

30S ribosomal protein S4

Chain BS12

30S ribosomal protein S12