IL_4XEJ_219

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_219 not in the Motif Atlas

Geometric match to IL_4LFB_024

Geometric discrepancy: 0.1984

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4XEJ|1|B16S|G|594
4XEJ|1|B16S|G|595
4XEJ|1|B16S|C|596
*
4XEJ|1|B16S|G|644
4XEJ|1|B16S|C|645

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS08

30S ribosomal protein S8

Chain BS17

30S ribosomal protein S17