IL_4XEJ_229

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_229 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1328

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4XEJ|1|B16S|C|779
4XEJ|1|B16S|A|780
4XEJ|1|B16S|A|781
4XEJ|1|B16S|A|782
4XEJ|1|B16S|C|783
*
4XEJ|1|B16S|G|799
4XEJ|1|B16S|G|800
4XEJ|1|B16S|U|801
4XEJ|1|B16S|A|802
4XEJ|1|B16S|G|803

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BS11

30S ribosomal protein S11