IL_4XEJ_232

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_232 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1766

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4XEJ|1|B16S|C|930
4XEJ|1|B16S|C|931
4XEJ|1|B16S|C|932
*
4XEJ|1|B16S|G|1385
4XEJ|1|B16S|G|1386
4XEJ|1|B16S|G|1387

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BIRE

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BS05

30S ribosomal protein S5

Chain BS07

30S ribosomal protein S7