IL_4XEJ_248

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_248 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.2117

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4XEJ|1|B16S|C|1132
4XEJ|1|B16S|G|1133
4XEJ|1|B16S|G|1134
*
4XEJ|1|B16S|C|1140
4XEJ|1|B16S|C|1141
4XEJ|1|B16S|G|1142

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS09

30S ribosomal protein S9