IL_4XEJ_250

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_250 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1759

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4XEJ|1|B16S|G|1241
4XEJ|1|B16S|C|1242
4XEJ|1|B16S|C|1243
*
4XEJ|1|B16S|G|1294
4XEJ|1|B16S|G|1295
4XEJ|1|B16S|C|1296

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS07

30S ribosomal protein S7

Chain BS13

30S ribosomal protein S13

Chain BTHX

30S ribosomal protein Thx