IL_4XEJ_283

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_283 not in the Motif Atlas

Geometric match to IL_4V88_417

Geometric discrepancy: 0.1943

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4XEJ|1|B23S|G|638
4XEJ|1|B23S|U|639
4XEJ|1|B23S|C|640
*
4XEJ|1|B23S|G|648
4XEJ|1|B23S|G|649
4XEJ|1|B23S|C|650

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL15

50S ribosomal protein L15

Chain BL35

50S ribosomal protein L35