IL_4XEJ_297

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_297 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1155

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

4XEJ|1|B23S|G|864
4XEJ|1|B23S|C|865
4XEJ|1|B23S|A|866
4XEJ|1|B23S|C|867
4XEJ|1|B23S|U|868
*
4XEJ|1|B23S|A|909
4XEJ|1|B23S|A|910
4XEJ|1|B23S|A|911
4XEJ|1|B23S|C|912

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain B5S

5S ribosomal RNA; 5S rRNA

Chain BL16

50S ribosomal protein L16

Chain BL25

50S ribosomal protein L25