IL_4XEJ_318
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_318 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0828
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4XEJ|1|B23S|A|1262
4XEJ|1|B23S|U|1263
4XEJ|1|B23S|G|1264
4XEJ|1|B23S|A|1265
4XEJ|1|B23S|G|1266
4XEJ|1|B23S|U|1267
4XEJ|1|B23S|A|1268
4XEJ|1|B23S|A|1269
*
4XEJ|1|B23S|U|2011
4XEJ|1|B23S|G|2012
4XEJ|1|B23S|A|2013
4XEJ|1|B23S|A|2014
4XEJ|1|B23S|A|2015
4XEJ|1|B23S|U|2016
4XEJ|1|B23S|U|2017
Current chains
- Chain B23S
- 23S ribosomal RNA
Nearby chains
- Chain BL04
- 50S ribosomal protein L4
- Chain BL17
- 50S ribosomal protein L17
- Chain BL22
- 50S ribosomal protein L22
- Chain BL32
- 50S ribosomal protein L32
Coloring options: