IL_4XEJ_333

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_333 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.1063

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4XEJ|1|B23S|G|1651
4XEJ|1|B23S|A|1652
4XEJ|1|B23S|G|1653
4XEJ|1|B23S|A|1654
4XEJ|1|B23S|A|1655
4XEJ|1|B23S|C|1656
*
4XEJ|1|B23S|G|2004
4XEJ|1|B23S|A|2005
4XEJ|1|B23S|C|2006

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL17

50S ribosomal protein L17