IL_4XEJ_352

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_352 not in the Motif Atlas

Homologous match to IL_7RQB_083

Geometric discrepancy: 0.1482

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4XEJ|1|B23S|C|2085
4XEJ|1|B23S|U|2086
4XEJ|1|B23S|G|2087
*
4XEJ|1|B23S|U|2232
4XEJ|1|B23S|U|2233
4XEJ|1|B23S|G|2234

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL28

50S ribosomal protein L28