IL_4XEJ_400

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGUAGA*UCCGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A23S|U|858
4XEJ|1|A23S|G|859
4XEJ|1|A23S|U|860
4XEJ|1|A23S|A|861
4XEJ|1|A23S|G|862
4XEJ|1|A23S|A|863
*
4XEJ|1|A23S|U|913
4XEJ|1|A23S|C|914
4XEJ|1|A23S|C|915
4XEJ|1|A23S|G|916
4XEJ|1|A23S|A|917
4XEJ|1|A23S|A|918
4XEJ|1|A23S|G|919

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL16

50S ribosomal protein L16

Chain AL25

50S ribosomal protein L25

Chain AL27

50S ribosomal protein L27

Chain AL30

50S ribosomal protein L30