IL_4XEJ_406

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

4XEJ|1|A23S|C|2111, 4XEJ|1|A23S|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A23S|C|2108
4XEJ|1|A23S|U|2109
4XEJ|1|A23S|G|2110
4XEJ|1|A23S|C|2111
4XEJ|1|A23S|G|2112
4XEJ|1|A23S|U|2113
4XEJ|1|A23S|A|2114
4XEJ|1|A23S|G|2115
4XEJ|1|A23S|G|2116
4XEJ|1|A23S|A|2117
4XEJ|1|A23S|U|2118
4XEJ|1|A23S|A|2119
4XEJ|1|A23S|G|2120
*
4XEJ|1|A23S|C|2178
4XEJ|1|A23S|C|2179
4XEJ|1|A23S|U|2180
4XEJ|1|A23S|G|2181

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains