IL_4XEJ_408

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

4XEJ|1|A23S|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_408 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.5275

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4XEJ|1|A23S|U|2401
4XEJ|1|A23S|C|2402
4XEJ|1|A23S|C|2403
*
4XEJ|1|A23S|G|2414
4XEJ|1|A23S|G|2415

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL15

50S ribosomal protein L15

Chain AL33

50S ribosomal protein L33

Chain AL35

50S ribosomal protein L35