IL_4XEJ_412

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGACAAC*GCUAAUCCC

Length

17 nucleotides

Bulged bases

4XEJ|1|B16S|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|B16S|G|146
4XEJ|1|B16S|G|147
4XEJ|1|B16S|G|148
4XEJ|1|B16S|A|149
4XEJ|1|B16S|C|150
4XEJ|1|B16S|A|151
4XEJ|1|B16S|A|152
4XEJ|1|B16S|C|153
*
4XEJ|1|B16S|G|168
4XEJ|1|B16S|C|169
4XEJ|1|B16S|U|170
4XEJ|1|B16S|A|171
4XEJ|1|B16S|A|172
4XEJ|1|B16S|U|173
4XEJ|1|B16S|C|174
4XEJ|1|B16S|C|175
4XEJ|1|B16S|C|176

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS20

30S ribosomal protein S20