IL_4XEJ_413

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAUCAGCU*GGCGACGACGG

Length

20 nucleotides

Bulged bases

4XEJ|1|B16S|U|244, 4XEJ|1|B16S|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|B16S|C|241
4XEJ|1|B16S|C|242
4XEJ|1|B16S|A|243
4XEJ|1|B16S|U|244
4XEJ|1|B16S|C|245
4XEJ|1|B16S|A|246
4XEJ|1|B16S|G|247
4XEJ|1|B16S|C|248
4XEJ|1|B16S|U|249
*
4XEJ|1|B16S|G|275
4XEJ|1|B16S|G|276
4XEJ|1|B16S|C|277
4XEJ|1|B16S|G|278
4XEJ|1|B16S|A|279
4XEJ|1|B16S|C|280
4XEJ|1|B16S|G|281
4XEJ|1|B16S|A|282
4XEJ|1|B16S|C|283
4XEJ|1|B16S|G|284
4XEJ|1|B16S|G|285

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS12

30S ribosomal protein S12

Chain BS17

30S ribosomal protein S17