IL_4XEJ_419
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAACC*GGGUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_419 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2786
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4XEJ|1|B16S|C|779
4XEJ|1|B16S|A|780
4XEJ|1|B16S|A|781
4XEJ|1|B16S|A|782
4XEJ|1|B16S|C|783
4XEJ|1|B16S|C|784
*
4XEJ|1|B16S|G|798
4XEJ|1|B16S|G|799
4XEJ|1|B16S|G|800
4XEJ|1|B16S|U|801
4XEJ|1|B16S|A|802
4XEJ|1|B16S|G|803
Current chains
- Chain B16S
- 16S ribosomal RNA
Nearby chains
- Chain B23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS11
- 30S ribosomal protein S11
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