IL_4XEJ_425

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCACC*GGGAG

Length

10 nucleotides

Bulged bases

4XEJ|1|B16S|C|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_425 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2987

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4XEJ|1|B16S|C|1259
4XEJ|1|B16S|C|1260
4XEJ|1|B16S|A|1261
4XEJ|1|B16S|C|1262
4XEJ|1|B16S|C|1263
*
4XEJ|1|B16S|G|1272
4XEJ|1|B16S|G|1273
4XEJ|1|B16S|G|1274
4XEJ|1|B16S|A|1275
4XEJ|1|B16S|G|1276

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS19

30S ribosomal protein S19

Chain BTHX

30S ribosomal protein Thx