IL_4XEJ_435

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4XEJ|1|B23S|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_435 not in the Motif Atlas

Homologous match to IL_9DFE_082

Geometric discrepancy: 0.1129

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

4XEJ|1|B23S|C|2081
4XEJ|1|B23S|A|2082
4XEJ|1|B23S|G|2083
*
4XEJ|1|B23S|C|2236
4XEJ|1|B23S|G|2237
4XEJ|1|B23S|G|2238
4XEJ|1|B23S|G|2239

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL28

50S ribosomal protein L28