IL_4XEJ_458

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4XEJ|1|B16S|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_458 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.3299

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4XEJ|1|B16S|C|1060
4XEJ|1|B16S|G|1061
*
4XEJ|1|B16S|C|1195
4XEJ|1|B16S|U|1196
4XEJ|1|B16S|G|1197

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS03

30S ribosomal protein S3

Chain BS05

30S ribosomal protein S5

Chain BS09

30S ribosomal protein S9

Chain BS10

30S ribosomal protein S10

Chain BS14

30S ribosomal protein S14