IL_4XEJ_463

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4XEJ|1|B23S|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_463 not in the Motif Atlas

Homologous match to IL_9DFE_032

Geometric discrepancy: 0.4506

The information below is about IL_9DFE_032

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4XEJ|1|B23S|G|880
4XEJ|1|B23S|G|881
*
4XEJ|1|B23S|U|895
4XEJ|1|B23S|A|896
4XEJ|1|B23S|C|897

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL11

50S ribosomal protein L11

Chain BL25

50S ribosomal protein L25