IL_4Y1M_001
3D structure
- PDB id
- 4Y1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUUU*AUAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y1M_001 not in the Motif Atlas
- Geometric match to IL_5C5W_003
- Geometric discrepancy: 0.1699
- The information below is about IL_5C5W_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 52
Unit IDs
4Y1M|1|A|A|3
4Y1M|1|A|U|4
4Y1M|1|A|U|5
4Y1M|1|A|U|6
*
4Y1M|1|A|A|103
4Y1M|1|A|U|104
4Y1M|1|A|A|105
4Y1M|1|A|U|106
Current chains
- Chain A
- E. coli yybP-ykoY riboswitch
Nearby chains
No other chains within 10ÅColoring options: