3D structure

PDB id
4Y1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUUU*AUAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4Y1M_001 not in the Motif Atlas
Geometric match to IL_5C5W_003
Geometric discrepancy: 0.1699
The information below is about IL_5C5W_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_54697.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
52

Unit IDs

4Y1M|1|A|A|3
4Y1M|1|A|U|4
4Y1M|1|A|U|5
4Y1M|1|A|U|6
*
4Y1M|1|A|A|103
4Y1M|1|A|U|104
4Y1M|1|A|A|105
4Y1M|1|A|U|106

Current chains

Chain A
E. coli yybP-ykoY riboswitch

Nearby chains

No other chains within 10Å

Coloring options:


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