4Y1M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4Y1M_001 | 1/A/54:61 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 HL_01609.3 | |
| HL_4Y1M_002 | 1/B/24:29 | GNRA HL_37824.7 | ||
| HL_4Y1M_003 | 1/B/55:60 | GNRA HL_37824.7 | ||
| HL_4Y1M_004 | 1/B/81:86 | GNRA HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4Y1M_001 | 1/A/3:6, 1/A/103:106 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_4Y1M_002 | 1/A/8:15, 1/A/96:101 | 8x6 Sarcin-Ricin with bulged A; G-bulge | geometric IL_4Y1M_006 IL_02349.4 | |
| IL_4Y1M_004 | 1/A/44:52, 1/A/63:64 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_4Y1M_005 | 1/B/4:6, 1/B/103:105 | Isolated non-canonical cWW pair IL_07785.1 | ||
| IL_4Y1M_006 | 1/B/8:15, 1/B/96:101 | 8x6 Sarcin-Ricin with bulged A; G-bulge IL_02349.4 | ||
| IL_4Y1M_007 | 1/B/44:52, 1/B/63:64 | Multiple bulged bases IL_46112.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4Y1M_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_4Y1M_001 | 1/B/17:19, 1/B/34:35, 1/B/73:75, 1/B/92:94 | No text annotation J4_45582.1 |
Problematic loops
No problematic loops
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