IL_4Y4O_006
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y4O_006 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.022
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4Y4O|1|1A|G|177
4Y4O|1|1A|G|178
4Y4O|1|1A|A|179
4Y4O|1|1A|A|180
4Y4O|1|1A|C|181
4Y4O|1|1A|U|182
4Y4O|1|1A|G|183
*
4Y4O|1|1A|C|190
4Y4O|1|1A|U|191
4Y4O|1|1A|C|192
4Y4O|1|1A|A|193
4Y4O|1|1A|G|194
4Y4O|1|1A|U|195
4Y4O|1|1A|A|196
4Y4O|1|1A|C|197
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 17
- 50S ribosomal protein L34
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
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