IL_4Y4O_059

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_059 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.042

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4Y4O|1|1A|A|1516
4Y4O|1|1A|G|1517
4Y4O|1|1A|A|1518
4Y4O|1|1A|A|1519
4Y4O|1|1A|G|1520
*
4Y4O|1|1A|U|1566
4Y4O|1|1A|G|1567
4Y4O|1|1A|G|1568
4Y4O|1|1A|U|1569

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains