IL_4Y4O_087

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

4Y4O|1|1A|U|2154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|1A|C|2150
4Y4O|1|1A|C|2151
4Y4O|1|1A|U|2152
4Y4O|1|1A|G|2153
4Y4O|1|1A|U|2154
4Y4O|1|1A|G|2155
4Y4O|1|1A|A|2156
4Y4O|1|1A|A|2157
4Y4O|1|1A|C|2158
*
4Y4O|1|1A|G|2177
4Y4O|1|1A|G|2178
4Y4O|1|1A|G|2179
4Y4O|1|1A|A|2180
4Y4O|1|1A|G|2181
4Y4O|1|1A|G|2182

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains