IL_4Y4O_114

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAACC*GAAC

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Incomplete nucleotides: 23, 24, 25, 26, 27, 28, 56, 58, 59, 60

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_114 not in the Motif Atlas

Homologous match to IL_7RQB_112

Geometric discrepancy: 0.0333

The information below is about IL_7RQB_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|1B|G|23
4Y4O|1|1B|G|24
4Y4O|1|1B|A|25
4Y4O|1|1B|A|26
4Y4O|1|1B|C|27
4Y4O|1|1B|C|28
*
4Y4O|1|1B|G|56
4Y4O|1|1B|A|58
4Y4O|1|1B|A|59
4Y4O|1|1B|C|60

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5

Chain 1S

50S ribosomal protein L18