IL_4Y4O_239

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4Y4O|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89197.1

Basepair signature

cWW-tSH-R-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4Y4O|1|2A|G|1526
4Y4O|1|2A|G|1527
4Y4O|1|2A|A|1528
4Y4O|1|2A|A|1528|||A
4Y4O|1|2A|G|1529
*
4Y4O|1|2A|U|1540
4Y4O|1|2A|G|1541
4Y4O|1|2A|A|1542
4Y4O|1|2A|C|1543
4Y4O|1|2A|A|1544
4Y4O|1|2A|A|1545
4Y4O|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains