IL_4Y4O_261

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUGUGAACCC*GGGGGAG

Length

17 nucleotides

Bulged bases

4Y4O|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|2A|C|2129
4Y4O|1|2A|U|2130
4Y4O|1|2A|G|2131
4Y4O|1|2A|U|2132
4Y4O|1|2A|G|2133
4Y4O|1|2A|A|2134
4Y4O|1|2A|A|2135
4Y4O|1|2A|C|2136
4Y4O|1|2A|C|2137
4Y4O|1|2A|C|2138
*
4Y4O|1|2A|G|2153
4Y4O|1|2A|G|2154
4Y4O|1|2A|G|2155
4Y4O|1|2A|G|2156
4Y4O|1|2A|G|2157
4Y4O|1|2A|A|2158
4Y4O|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains